PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G22100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 868aa    MW: 92831.1 Da    PI: 5.4443
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G22100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.81.7e-22122177156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k
  OGLUM04G22100.1 122 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 177
                      688999***********************************************998 PP

2START140.91.3e-443335992206
                      HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGG.....CT-TT- CS
            START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddke.....qWdetl 76 
                      la +a++elvk+a+ ++p+W   +        es+n +e+l +f++  +     + +ea+r+sg+v+ +  a lve+l+d  e     +W+ ++
  OGLUM04G22100.1 333 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDEFEflrqrRWSDMF 426
                      67899***************9766667999****************9999**************998651568********************* PP

                      S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEE CS
            START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgili 154
                           ka+t+e is+g      gal lm+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+    +      s   + +++lpSg+++
  OGLUM04G22100.1 427 ScmiaKASTTEEISTGvagsrnGALLLMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPSGCVL 520
                      *****************************************************************9987666666454555689********** PP

                      EEECTCE...........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 155 epksngh...........................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++ng                              vtwveh++++++++h l+r+l++sgla ga +w atlqrqce+
  OGLUM04G22100.1 521 QDTPNGFvkylvqisvfsevynlsidqfldlppaFMVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 599
                      *********************************99******************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-22106177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-24108179IPR009057Homeodomain-like
PROSITE profilePS5007118.366119179IPR001356Homeobox domain
SMARTSM003893.2E-20120183IPR001356Homeobox domain
CDDcd000861.27E-20121177No hitNo description
PfamPF000468.2E-20122177IPR001356Homeobox domain
PRINTSPR000319.8E-5150159IPR000047Helix-turn-helix motif
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PRINTSPR000319.8E-5159175IPR000047Helix-turn-helix motif
PROSITE profilePS5084840.163323602IPR002913START domain
SuperFamilySSF559616.59E-18326526No hitNo description
CDDcd088751.87E-97327598No hitNo description
SMARTSM002343.2E-28332599IPR002913START domain
PfamPF018521.6E-36333599IPR002913START domain
SuperFamilySSF559616.59E-18554599No hitNo description
SuperFamilySSF559612.75E-15619833No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MSFGVGDHFG DGVVPAGMQF PFSGAGPGVF TSSPALSLAL ADAVAGLNSG GGGKMVTAAH  60
GGVGGGGGGG RAKARDALEV ENEMSRSGSD HLDVVSCGDA GGGGGDDDDD EDAEHGNPPK  120
RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RAELSKRLGL EPRQVKFWFQ NRRTQMKMQL  180
ERHENALLKQ ENDKLRSENL SIREATSNAV CVGCGGPAML GEVSLEEHHL RVENARLKDE  240
LSRVCALAAK FLGKSISVMA PPQMHQPHPV PGSSLELAVG GIGSMPSATM PISTITDFAG  300
AMSSSMGTVI TPMKSEAEPS AMAGIDKSLF LELAMSAMDE LVKMAQMGDP LWIPGASVPS  360
SPAKESLNFE EYLNTFPPCI GVKPEGYVSE ASRESGIVII DDGAALVETL MDEFEFLRQR  420
RWSDMFSCMI AKASTTEEIS TGVAGSRNGA LLLMQAELQV LSPLVPIREV KFLRFSKQLA  480
DGVWAVVDVS ADELMRDQGI TSASSTANMN CRRLPSGCVL QDTPNGFVKY LVQISVFSEV  540
YNLSIDQFLD LPPAFMVTWV EHTEYDEASV HPLYRPLLRS GLALGAGRWI ATLQRQCECL  600
ALLMSSIALP ENDSSAIHPE GKRSMLKLAR RMTDNFCAGV STSSTREWSK LVGLTGNIGE  660
DVHVMARKSV DEPGTPPGVV LSAATSVWMP VMPERLFNFL HNKGLRAEWD ILSNGGPMQE  720
VTSIAKGQQN GNTVCLLKAS SSVPLTKNFT VQPTKDKQNS MLILQETCAD ASGSMVVYAP  780
VDIPAMHLVM SGGDSSCVAL LPSGFAILPA GPSIGADHKM GGSLLTVAFQ ILANSQPSAK  840
LTVESVETVS NLISCTIKKI KTALHCDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119140.0AK111914.1 Oryza sativa Japonica Group cDNA clone:J033128F17, full insert sequence.
GenBankAK1120990.0AK112099.1 Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637147.10.0PREDICTED: homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A0D9ZPF80.0A0A0D9ZPF8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA014527-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein